Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916037.1_cds_XP_016465717.1_58644
CDS Infomation

[gene=LOC107788555] [db_xref=GeneID:107788555] [protein=E3 ubiquitin-protein ligase XBAT33-like] [protein_id=XP_016465717.1] [location=complement(join(15086..15624,17355..17446,18725..18868,18957..19003,19166..19224,19305..19465,19804..19988,20117..20188,20452..20511,20599..20775))] [gbkey=CDS]
Sequence

ATGGGGAATTCATTTGGGTGCTCGGCATCCGGCGAACGGCTGGTATCGGCGGCGAGAGAC
GGTGATTACGTGGAAGCAAAGATGTTGCTTGATTGCAATCCATGCCTCTCCAAATACTCT
ACTTTTGGTGGCCTCAATTCCCCTCTTCACTTTGCTGCCGCCAAAGGCCACAACGACATT
GTTGCATTGTTGCTTGGGAACGGTGCTGATGTCAATTCGAGAAATTATTGTGGTCAGACG
GCATTGATGCAGGCGTGTCGATATGGTCACTGGGAAGTTGTTCAAACCCTTCTTCTTTTT
AGATGCAACGTTACGAGGGCGGATTATCTAAGTGGGAGGACAGCTCTCCATTTTGCAGCA
GTGAATGGACATGTTAGATGCATACGACTCGTGGTGGCTGATTTCGTTCCTAGTGCCCCT
TTTGATTCAATAAATTCTCAAGCAGATGCTGACAGAGGTGACAGTTCAAACTCAAAATGC
AAGCATGAGCAAAGTGCGCTGTCAAAGTTTGTAAATAAAGCTGCTGATGGTGGTATTACT
GCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTCCAGCTCCTGCTTGATCTT
AATGCAAATGTATCAGCTGTGACATTTCACTATGGGTCATCGATGGATCTGATAGGAGCT
GGAAGTACTCCTTTGCACTATGCTGCCTGCGGAGGAAATCTAAAATGCTGTCAGATCCTT
ATTGCAAGAGGTGCCAGTCGATTGACATTGAACTGCAATGGGTGGCTTCCTCTCGATGTT
GCCAGGATGTGGGGGCGTCATTGGCTTGAACCGTTACTTGCACCAAATTCTGATTCAATA
ATTCCACCCTTTCCATCTTCAAGTTATTTATCGTTGCCTCTATTAAGCGTGCTTAACATC
GCAAGAGAGTGTGGTTTACAGTCTTCAACAACTTCATCTGATGATTCTGATACTTGTGCC
GTTTGCCTGGAGAGGGTATGTTCAGTGGCTGCCGAAGGTTGTGGGCATCAATTGTGTGTA
AGATGTGCACTCTATCTTTGCTCTGCAAGCAACATCCCATCTGAATTATTGGGTCCGCCT
GGCTCCATCCCATGTCCACTTTGCAGACATGGCATTGTCTCATTTGTAAAACTCCCTGGA
TCTCCTGCAAAGGAATTTAAGTTACATCTATCCCTCAGCTTATGCACACCGTGCATGCTT
CATCCTCGGGAGCAAGATCGATCAACACCCTCTAGTGCACATGAGATTAGAAAGAATCGT
GTTGCTTCAGTGTCTTCTGATTTTTCCTGTCCTGTGACTTGTAGCCCATTTCCTTCTGTT
GCAATCCCTTTGTGTACTTGTGATGAAGGACCTTCCCCAACTTTGGAATCCAGAGAAAAT
GACACTCAAGATGAAACTTCTAATCAGTCACAGTCCACTTCAAATGACCAAGACAAAATG
AATGTGAGATTGGAGAAAACTACCTGCTCTAACATGTTTTGGGGCAGAAGAAGTTGCAGC
AGGGAGCATCAGTGTAATGCTGAGATTAATGCTTAA

Peptide Sequence

PEP ID

XP_016465717.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Nicotiana tabacum]
Sequence

MGNSFGCSASGERLVSAARDGDYVEAKMLLDCNPCLSKYSTFGGLNSPLHFAAAKGHNDI
VALLLGNGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA
VNGHVRCIRLVVADFVPSAPFDSINSQADADRGDSSNSKCKHEQSALSKFVNKAADGGIT
ALHMAALNGYFDCVQLLLDLNANVSAVTFHYGSSMDLIGAGSTPLHYAACGGNLKCCQIL
IARGASRLTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPPFPSSSYLSLPLLSVLNI
ARECGLQSSTTSSDDSDTCAVCLERVCSVAAEGCGHQLCVRCALYLCSASNIPSELLGPP
GSIPCPLCRHGIVSFVKLPGSPAKEFKLHLSLSLCTPCMLHPREQDRSTPSSAHEIRKNR
VASVSSDFSCPVTCSPFPSVAIPLCTCDEGPSPTLESRENDTQDETSNQSQSTSNDQDKM
NVRLEKTTCSNMFWGRRSCSREHQCNAEINA

Transcript Sequence

Gene sequence data has not been registered.